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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
382
ATAC-seq
188
DNase-seq
84
snATAC-seq
4
FAIRE-seq
Assay category
1663
DNA binding
1651
Transcription
658
DNA accessibility
42
DNA methylation
25
3D chromatin structure
1
DNA sequencing
Date released
170
June, 2019
100
May, 2020
82
August, 2021
60
May, 2022
58
February, 2023
41
February, 2021
25
November, 2019
23
October, 2019
18
May, 2021
16
January, 2021
11
May, 2023
10
April, 2020
10
November, 2018
8
August, 2017
8
October, 2017
6
July, 2019
4
March, 2019
3
January, 2018
2
March, 2020
2
November, 2020
1
August, 2022
Available data
387
bed narrowPeak
331
bam
290
bigWig
196
bigBed narrowPeak
188
bed bed3+
187
bed broadPeak
185
bigBed broadPeak
70
fastq
64
xls
21
zippedFastqFolder
13
tsv
12
bed bed3
7
bed bedgraph
4
txt
Organism
657
Homo sapiens
Biosample type
415
tissue
197
primary cell
43
in vitro differentiated cells
3
cell line
Organ
173
pancreas
163
kidney
epithelium
77
heart
58
vasculature
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
571
AMP
48
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
387
hg19
339
GRCh38
Lab
437
AMP-T2D consortium
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
48
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
29
audit script error
25
inconsistent ontology term
1
inconsistent replicate
organ_slims!
epithelium
blood vessel
BIOSAMPLE
ASSAY
658 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
68
1
7
1
liver
20
2
heart
18
retina
15
3
+ See 55 more…
primary cell
Langerhans cell
48
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
+ See 40 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
GM12878
1
HepG2
1
Panc1
1
See all biosamples
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