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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1663
ChIP-seq
1342
total RNA-seq
382
ATAC-seq
287
single cell RNA-seq
188
DNase-seq
86
RNA microarray
84
snATAC-seq
56
pCHi-C
26
WGBS
25
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
188
DNA accessibility
Date released
170
June, 2019
9
November, 2018
5
August, 2017
3
October, 2019
2
August, 2021
1
November, 2020
Available data
187
bam
187
bed narrowPeak
187
bigBed narrowPeak
187
bigWig
185
bed bed3+
185
bed broadPeak
185
bigBed broadPeak
12
fastq
Organism
190
Homo sapiens
Biosample type
173
tissue
13
primary cell
3
in vitro differentiated cells
1
cell line
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
epithelium
18
ureter
11
connective tissue
11
vasculature
10
pancreas
blood vessel
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
190
AMP
Genome assembly (visualization)
185
GRCh38
172
hg19
Lab
188
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
organ_slims!
epithelium
blood vessel
BIOSAMPLE
ASSAY
190 results
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DNase-seq
Capture-C
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
cell line
Panc1
1
See all biosamples
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