Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1663
ChIP-seq
1342
total RNA-seq
382
ATAC-seq
287
single cell RNA-seq
188
DNase-seq
86
RNA microarray
84
snATAC-seq
56
pCHi-C
26
WGBS
25
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
84
DNA accessibility
Date released
111
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
7
August, 2021
2
February, 2023
1
August, 2022
1
December, 2019
Available data
85
txt
27
fastq
21
zippedFastqFolder
1
bed bed3+
1
tsv
Organism
168
Homo sapiens
Biosample type
114
tissue
56
primary cell
Organ
84
bone element
11
pancreas
10
lung
8
blood
8
bodily fluid
8
kidney
1
adipose tissue
1
connective tissue
epithelium
1
musculature of body
Project
94
AMP
48
HPAP
18
T1D
10
LungMap
Genome assembly (visualization)
1
hg19
Lab
88
AMP-T2D consortium
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
84
inconsistent ontology term
30
audit script error
organ_slims!
epithelium
blood vessel
BIOSAMPLE
ASSAY
170 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
snATAC-seq
tissue
bone element
84
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
+ See 3 more…
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
See all biosamples
Download