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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
total RNA-seq
18
small RNA-seq
10
WGBS
9
RRBS
6
Hi-C
4
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
56
Transcription
19
DNA methylation
6
3D chromatin structure
6
DNA accessibility
Target of assay
3
control
Date released
617
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
307
August, 2021
253
October, 2019
195
June, 2019
135
July, 2018
120
May, 2022
118
February, 2023
88
November, 2018
87
July, 2019
80
April, 2019
75
December, 2017
74
October, 2018
65
May, 2019
55
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
71
bigWig
69
bam
56
tsv
16
bed bedMethyl
16
bigBed bedMethyl
5
bed narrowPeak
2
bed bed3+
2
bigBed narrowPeak
2
hdf5
Organism
87
Homo sapiens
Biosample type
70
tissue
17
primary cell
Organ
25
heart
18
brain
18
connective tissue
epithelium
12
adipose tissue
12
vasculature
blood vessel
11
kidney
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
87
AMP
Genome assembly (visualization)
72
hg19
67
GRCh38
Lab
87
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
blood vessel
BIOSAMPLE
ASSAY
87 results
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total RNA-seq
small RNA-seq
WGBS
RRBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
4
1
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 22 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 9 more…
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