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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
78
ChIP-seq
17
total RNA-seq
8
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
111
Transcription
78
DNA binding
10
DNA methylation
3
3D chromatin structure
3
DNA accessibility
Target of assay
58
histone
58
histone modification
37
broad histone mark
21
narrow histone mark
14
control
6
transcription factor
4
RNA binding protein
Date released
92
August, 2021
57
April, 2019
June, 2019
22
July, 2019
16
May, 2019
8
October, 2019
7
March, 2020
3
May, 2021
2
February, 2020
1
February, 2023
Available data
113
tsv
102
bam
89
bigWig
67
bed narrowPeak
58
bigBed narrowPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
208
Homo sapiens
Biosample type
204
tissue
3
primary cell
1
in vitro differentiated cells
Organ
942
pancreas
789
liver
666
connective tissue
epithelium
490
adipose tissue
318
heart
273
kidney
256
brain
229
vasculature
blood vessel
159
bone element
139
artery
90
limb
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
208
AMP
Genome assembly (visualization)
88
GRCh38
88
hg19
Lab
208
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
blood vessel
month_released!
June, 2019
BIOSAMPLE
ASSAY
208 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
35
3
4
2
1
1
1
heart right ventricle
17
13
1
2
1
1
right cardiac atrium
18
6
1
1
heart
1
14
4
1
1
1
left cardiac atrium
18
+ See 9 more…
primary cell
cardiac atrium fibroblast
1
cardiac fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
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