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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
93
single cell RNA-seq
28
DNase-seq
15
total RNA-seq
8
WGBS
3
ATAC-seq
2
RRBS
1
Hi-C
1
small RNA-seq
Assay category
123
DNA binding
109
Transcription
31
DNA accessibility
10
DNA methylation
1
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
33
June, 2019
22
July, 2019
16
May, 2019
8
October, 2019
March, 2020
3
May, 2021
2
February, 2020
1
February, 2023
Available data
158
bigWig
138
bed narrowPeak
133
bam
108
tsv
89
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
1
bedpe bed3+
1
hic
Organism
274
Homo sapiens
Biosample type
262
tissue
11
primary cell
1
in vitro differentiated cells
Organ
932
pancreas
788
liver
682
connective tissue
epithelium
490
adipose tissue
386
heart
352
kidney
284
brain
232
vasculature
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
274
AMP
Genome assembly (visualization)
157
GRCh38
112
hg19
Lab
234
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
organ_slims!
epithelium
blood vessel
month_released!
March, 2020
BIOSAMPLE
ASSAY
274 results
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ChIP-seq
single cell RNA-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
RRBS
Hi-C
small RNA-seq
tissue
heart left ventricle
35
18
3
2
4
2
1
left cardiac atrium
40
18
1
heart
14
1
18
4
1
1
1
heart right ventricle
13
17
1
2
right cardiac atrium
6
18
1
+ See 9 more…
primary cell
cardiac fibroblast
5
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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