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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1580
ChIP-seq
1113
total RNA-seq
366
ATAC-seq
285
single cell RNA-seq
185
DNase-seq
86
RNA microarray
73
snATAC-seq
56
pCHi-C
24
WGBS
21
Hi-C
16
small RNA-seq
13
RRBS
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
285
Transcription
Target of assay
3
control
Date released
106
August, 2021
47
September, 2023
40
September, 2020
34
May, 2022
18
February, 2021
9
April, 2020
9
July, 2018
8
April, 2018
3
December, 2019
3
July, 2019
3
May, 2023
2
June, 2018
1
February, 2023
1
November, 2018
1
September, 2018
Available data
127
tsv
55
fastq
52
zippedFastqFolder
22
bam
22
bigWig
13
txt
8
csv
Organism
285
Homo sapiens
Biosample type
174
tissue
109
primary cell
2
in vitro differentiated cells
Organ
93
heart
pancreas
epithelium
64
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
144
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
22
GRCh38
22
hg19
Lab
133
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
7
audit script error
4
inconsistent ontology term
organ_slims!
epithelium
pancreas
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
285 results
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single cell RNA-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
primary cell
Langerhans cell
85
pancreatic cell
9
mesenchymal cell
6
cerebellar granule cell
2
mast cell
2
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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