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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
163
ChIP-seq
154
total RNA-seq
128
ATAC-seq
109
single cell RNA-seq
56
snATAC-seq
17
pCHi-C
13
DNase-seq
4
RRBS
3
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
265
Transcription
197
DNA accessibility
163
DNA binding
5
DNA methylation
3
3D chromatin structure
Target of assay
147
histone
147
histone modification
80
broad histone mark
67
narrow histone mark
14
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
54
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
35
June, 2019
18
July, 2019
17
August, 2017
9
July, 2018
8
April, 2018
8
January, 2021
6
November, 2020
3
November, 2017
2
June, 2018
1
March, 2023
1
November, 2018
1
October, 2019
1
September, 2018
Available data
350
bigWig
335
bam
177
bed narrowPeak
146
tsv
140
fastq
96
tagAlign
73
zippedFastqFolder
47
bigBed narrowPeak
27
bed broadPeak
27
bigBed broadPeak
16
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
650
Homo sapiens
Biosample type
2257
tissue
650
primary cell
560
cell line
370
in vitro differentiated cells
10
stem cell
Organ
epithelium
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
273
AMP
204
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
369
hg19
279
GRCh38
Lab
239
Kyle Gaulton, UCSD
238
AMP-T2D consortium
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
40
inconsistent ontology term
27
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
inconsistent control run_type
organ_slims!
epithelium
pancreas
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
650 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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