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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
790
ChIP-seq
302
total RNA-seq
178
ATAC-seq
171
DNase-seq
168
single cell RNA-seq
24
pCHi-C
23
WGBS
17
snATAC-seq
14
small RNA-seq
12
Hi-C
9
RRBS
2
FAIRE-seq
2
RNA microarray
Assay category
790
DNA binding
484
Transcription
368
DNA accessibility
32
DNA methylation
12
3D chromatin structure
Target of assay
555
histone modification
554
histone
292
narrow histone mark
262
broad histone mark
158
control
77
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
February, 2021
239
October, 2019
227
August, 2021
193
May, 2020
159
June, 2019
137
August, 2017
113
May, 2019
82
November, 2017
80
April, 2019
71
July, 2019
63
February, 2023
48
December, 2017
47
September, 2023
42
May, 2022
40
May, 2024
31
March, 2020
24
February, 2020
23
October, 2018
19
April, 2020
19
November, 2018
18
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
3
May, 2021
2
December, 2019
2
January, 2018
1
November, 2019
Available data
1026
bam
955
bigWig
841
bed narrowPeak
499
bigBed narrowPeak
346
tsv
222
tagAlign
193
bed broadPeak
178
bed bed3+
170
bigBed broadPeak
164
fastq
64
xls
62
txt
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
5
bed bed3
1
tagAlign bed3+
Organism
1710
Homo sapiens
Biosample type
1712
tissue
609
primary cell
498
cell line
344
in vitro differentiated cells
10
stem cell
Organ
pancreas
360
liver
313
heart
291
kidney
265
brain
133
blood vessel
133
vasculature
116
limb
103
connective tissue
102
adipose tissue
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1645
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1021
GRCh38
878
hg19
Lab
1423
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
7
inconsistent ontology term
2
audit script error
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent control read length
organ_slims!
epithelium
pancreas
month_released!
February, 2021
BIOSAMPLE
ASSAY
1712 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
WGBS
snATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
RNA microarray
tissue
liver
145
167
20
2
1
3
1
1
1
kidney
27
49
75
13
59
6
1
1
1
heart left ventricle
35
3
2
3
18
1
4
1
1
left cardiac atrium
40
1
18
islet of Langerhans
21
14
10
4
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