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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
single cell RNA-seq
76
ATAC-seq
73
total RNA-seq
39
ChIP-seq
6
snATAC-seq
5
STARR-seq
2
Capture-C
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
177
Transcription
82
DNA accessibility
39
DNA binding
2
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
11
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
617
February, 2021
400
November, 2017
341
May, 2020
336
May, 2021
309
August, 2021
235
October, 2019
223
August, 2017
192
June, 2019
108
May, 2019
100
February, 2023
96
May, 2022
87
July, 2019
81
November, 2018
80
April, 2019
75
December, 2017
49
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2018
22
February, 2020
19
April, 2020
18
October, 2017
15
May, 2023
9
July, 2018
8
April, 2018
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
120
tsv
103
bed narrowPeak
64
xls
57
txt
45
bam
44
bigWig
20
tagAlign
2
bed bed3+
2
hic
1
bedpe bed3+
1
vcf
Organism
308
Homo sapiens
Biosample type
225
tissue
42
cell line
42
in vitro differentiated cells
Organ
130
kidney
92
heart
35
liver
8
embryo
6
blood vessel
epithelium
6
vasculature
5
connective tissue
pancreas
artery
1
adipose tissue
Project
309
AMP
Genome assembly (visualization)
102
GRCh38
57
hg19
Lab
143
AMP-T2D consortium
128
Katalin Susztak, Upenn
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
pancreas
artery
BIOSAMPLE
ASSAY
309 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 9 more…
cell line
HepG2
9
18
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
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