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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ChIP-seq
134
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
139
DNA binding
136
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
72
histone
72
histone modification
43
transcription factor
36
narrow histone mark
35
broad histone mark
24
control
9
RNA binding protein
2
chromatin remodeller
Date released
124
May, 2021
54
August, 2017
39
February, 2018
26
February, 2021
24
December, 2017
22
August, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
267
bam
239
bigWig
129
tsv
122
fastq
114
bed narrowPeak
tagAlign
25
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
333
Homo sapiens
Biosample type
2391
tissue
584
primary cell
503
cell line
333
in vitro differentiated cells
10
stem cell
Organ
83
connective tissue
29
embryo
epithelium
15
liver
1
adipose tissue
1
heart
Project
333
AMP
Genome assembly (visualization)
262
hg19
229
GRCh38
4
hg18
Lab
279
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
107
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
organ_slims!
epithelium
vasculature
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
333 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
53
5
8
1
1
cardiomyocytes
59
embryonic stem cell
40
7
6
1
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
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