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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
37
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
150
DNA accessibility
Transcription
37
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
9
control
8
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
73
August, 2021
68
June, 2019
23
April, 2019
14
October, 2019
11
May, 2023
3
February, 2021
2
July, 2019
2
March, 2020
1
December, 2019
Available data
160
bed narrowPeak
106
bam
96
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
6
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
197
Homo sapiens
Biosample type
183
tissue
14
cell line
Organ
598
liver
467
pancreas
epithelium
262
brain
229
kidney
227
heart
203
connective tissue
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
197
AMP
Genome assembly (visualization)
170
GRCh38
97
hg19
Lab
113
AMP-T2D consortium
82
Katalin Susztak, Upenn
2
Bing Ren, UCSD
Audit category:
12
inconsistent ontology term
1
audit script error
organ_slims!
epithelium
vasculature
assay_slims!
Transcription
BIOSAMPLE
ASSAY
197 results
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ATAC-seq
DNase-seq
ChIP-seq
snATAC-seq
snDrop-seq
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
RNA microarray
RRBS
tissue
kidney
75
13
27
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 8 more…
cell line
RCC 7860 HIF1a re-expression
4
RCC 7860 vector
3
1
RCC 7860 HIF2a over-expression
3
HEK293T
2
RCC 7860 VHL
1
See all biosamples
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