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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
single cell RNA-seq
4
total RNA-seq
3
snDrop-seq
2
pCHi-C
1
RNA microarray
1
small RNA-seq
Assay category
10
Transcription
Date released
8
February, 2021
3
October, 2019
2
July, 2019
2
March, 2020
1
December, 2019
Available data
160
bed narrowPeak
111
bam
101
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
16
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
16
Homo sapiens
Biosample type
11
tissue
5
cell line
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
epithelium
68
blood vessel
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
16
AMP
Genome assembly (visualization)
5
GRCh38
5
hg19
Lab
16
AMP-T2D consortium
Audit category:
6
audit script error
5
inconsistent ontology term
organ_slims!
epithelium
vasculature
BIOSAMPLE
ASSAY
16 results
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single cell RNA-seq
total RNA-seq
snDrop-seq
pCHi-C
RNA microarray
small RNA-seq
tissue
kidney
5
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 1 more…
cell line
RCC 7860 vector
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 VHL
1
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