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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
22
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
174
Transcription
82
DNA accessibility
22
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
histone
17
histone modification
11
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
617
February, 2021
314
May, 2020
314
November, 2017
290
August, 2021
235
May, 2021
198
August, 2017
177
June, 2019
135
July, 2018
120
May, 2022
118
February, 2023
96
October, 2019
88
November, 2018
87
July, 2019
58
December, 2017
53
March, 2020
47
September, 2023
45
November, 2019
44
October, 2018
40
September, 2020
35
December, 2018
23
February, 2018
23
January, 2019
22
February, 2020
20
April, 2019
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
May, 2019
11
October, 2017
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
5
May, 2024
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
117
tsv
87
bed narrowPeak
64
xls
57
txt
32
bam
28
bigWig
7
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
289
Homo sapiens
Biosample type
223
tissue
39
cell line
28
in vitro differentiated cells
Organ
130
kidney
92
heart
29
liver
8
embryo
6
blood vessel
vasculature
5
connective tissue
4
pancreas
epithelium
2
artery
1
adipose tissue
Project
290
AMP
Genome assembly (visualization)
89
GRCh38
42
hg19
Lab
128
Katalin Susztak, Upenn
125
AMP-T2D consortium
33
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
vasculature
target.investigated_as!
histone
BIOSAMPLE
ASSAY
290 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 9 more…
cell line
HepG2
9
15
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
7
adipocyte
1
1
osteoblast
1
1
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