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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
593
ChIP-seq
184
total RNA-seq
23
ATAC-seq
8
snATAC-seq
5
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
593
DNA binding
188
Transcription
36
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
387
transcription factor
112
control
89
histone modification
88
histone
82
recombinant protein
66
RNA binding protein
54
narrow histone mark
34
broad histone mark
32
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
68
November, 2018
54
August, 2017
48
December, 2017
40
May, 2022
31
August, 2021
28
December, 2018
23
January, 2019
8
January, 2021
8
July, 2019
6
October, 2019
3
February, 2021
3
March, 2020
1
February, 2020
1
January, 2018
1
June, 2019
Available data
715
bam
653
bigWig
510
fastq
476
bed narrowPeak
397
bigBed narrowPeak
169
tsv
82
tagAlign
62
bed broadPeak
62
bigBed broadPeak
8
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
832
Homo sapiens
Biosample type
462
cell line
361
tissue
9
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
824
AMP
8
T1D
Genome assembly (visualization)
654
hg19
561
GRCh38
Lab
753
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
8
Kyle Gaulton, UCSD
Audit category:
28
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
832 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
1
2
2
2
1
GM12878
60
1
tissue
liver
145
167
20
2
3
1
1
1
1
1
right lobe of liver
10
3
1
2
1
2
primary cell
peripheral blood mononuclear cell
8
hepatic stellate cell
1
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