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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
14
total RNA-seq
8
snATAC-seq
1
ATAC-seq
1
GRO-seq
Assay category
78
DNA binding
14
Transcription
9
DNA accessibility
Target of assay
54
transcription factor
11
control
11
histone
11
histone modification
10
RNA binding protein
10
chromatin remodeller
7
narrow histone mark
4
broad histone mark
Date released
27
December, 2018
18
January, 2019
15
November, 2018
13
February, 2018
9
December, 2017
8
August, 2021
8
January, 2021
2
January, 2018
2
May, 2021
Available data
92
bam
83
fastq
82
bigWig
66
bed narrowPeak
54
bigBed narrowPeak
14
tsv
3
bed bed3+
Organism
102
Homo sapiens
Biosample type
69
cell line
25
in vitro differentiated cells
8
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
94
AMP
8
T1D
Genome assembly (visualization)
82
hg19
81
GRCh38
1
hg18
Lab
94
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
1
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
organ_slims!
epithelium
BIOSAMPLE
ASSAY
102 results
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ChIP-seq
total RNA-seq
snATAC-seq
ATAC-seq
GRO-seq
cell line
GM12878
60
1
H1-hESC
8
in vitro differentiated cells
pancreatic endoderm
18
4
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
peripheral blood mononuclear cell
8
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