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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ChIP-seq
10
total RNA-seq
8
snATAC-seq
1
ATAC-seq
1
GRO-seq
Assay category
69
DNA binding
10
Transcription
9
DNA accessibility
Target of assay
54
transcription factor
10
RNA binding protein
10
chromatin remodeller
8
control
5
histone
5
histone modification
4
narrow histone mark
1
broad histone mark
Date released
27
December, 2018
18
January, 2019
15
November, 2018
February, 2018
9
December, 2017
8
August, 2021
8
January, 2021
2
January, 2018
2
May, 2021
Available data
79
bam
72
bigWig
70
fastq
60
bed narrowPeak
54
bigBed narrowPeak
10
tsv
3
bed bed3+
Organism
89
Homo sapiens
Biosample type
69
cell line
12
in vitro differentiated cells
8
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
24
embryo
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
81
AMP
8
T1D
Genome assembly (visualization)
72
hg19
71
GRCh38
1
hg18
Lab
81
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
1
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
organ_slims!
epithelium
month_released!
February, 2018
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
total RNA-seq
snATAC-seq
ATAC-seq
GRO-seq
cell line
GM12878
60
1
H1-hESC
8
in vitro differentiated cells
pancreatic endoderm
9
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
peripheral blood mononuclear cell
8
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