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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
19
total RNA-seq
2
DNase-seq
1
ATAC-seq
1
GRO-seq
Assay category
53
DNA binding
19
Transcription
3
DNA accessibility
Target of assay
34
histone
34
histone modification
20
broad histone mark
16
control
14
narrow histone mark
3
transcription factor
Date released
42
October, 2019
13
February, 2018
9
December, 2017
8
August, 2021
2
May, 2021
1
February, 2020
1
January, 2018
Available data
74
bam
58
bigWig
39
bed narrowPeak
26
bigBed narrowPeak
23
fastq
19
tsv
5
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
76
Homo sapiens
Biosample type
43
tissue
25
in vitro differentiated cells
8
cell line
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
76
AMP
Genome assembly (visualization)
58
GRCh38
58
hg19
1
hg18
Lab
76
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
organ_slims!
epithelium
BIOSAMPLE
ASSAY
76 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
GRO-seq
tissue
tibial nerve
35
5
2
1
in vitro differentiated cells
pancreatic endoderm
18
4
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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