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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
64
single cell RNA-seq
total RNA-seq
37
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
RNA microarray
1
RRBS
1
small RNA-seq
Assay category
150
DNA accessibility
65
Transcription
37
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
9
control
8
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
81
August, 2021
68
June, 2019
47
September, 2023
23
April, 2019
14
May, 2023
14
October, 2019
8
February, 2021
3
July, 2019
2
December, 2019
2
March, 2020
Available data
160
bed narrowPeak
107
bam
97
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
13
txt
12
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
262
Homo sapiens
Biosample type
248
tissue
14
cell line
Organ
602
liver
543
pancreas
epithelium
294
kidney
281
heart
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
215
AMP
47
KPMP
Genome assembly (visualization)
171
GRCh38
98
hg19
Lab
120
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
2
Bing Ren, UCSD
Audit category:
12
inconsistent ontology term
6
audit script error
organ_slims!
epithelium
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
262 results
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ATAC-seq
DNase-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
RNA microarray
RRBS
small RNA-seq
tissue
kidney
75
13
64
27
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 9 more…
cell line
RCC 7860 HIF1a re-expression
4
RCC 7860 vector
3
1
RCC 7860 HIF2a over-expression
3
HEK293T
2
RCC 7860 VHL
1
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