Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
272
total RNA-seq
14
single cell RNA-seq
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
Assay category
288
Transcription
1
DNA accessibility
Date released
122
July, 2018
89
August, 2017
36
May, 2021
19
November, 2019
8
April, 2018
4
February, 2020
4
July, 2019
4
October, 2019
3
March, 2020
1
August, 2021
Available data
588
bam
503
bigWig
290
tsv
243
fastq
233
bed narrowPeak
153
bigBed narrowPeak
65
bed bed3+
57
bed broadPeak
43
bigBed broadPeak
16
tagAlign
7
bed bedMethyl
7
bigBed bedMethyl
6
txt
3
bedpe bed3+
3
hic
1
bedpe
1
hdf5
Organism
290
Homo sapiens
Biosample type
282
tissue
8
primary cell
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
290
AMP
Genome assembly (visualization)
284
hg19
283
GRCh38
Lab
289
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
organ_slims!
epithelium
BIOSAMPLE
ASSAY
290 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
ATAC-seq
pCHi-C
tissue
islet of Langerhans
261
6
1
body of pancreas
3
2
tibial nerve
5
pancreas
1
1
gastrocnemius medialis
1
+ See 1 more…
primary cell
pancreatic stellate cell
4
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
See all biosamples
Download