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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
184
total RNA-seq
22
ATAC-seq
5
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
188
Transcription
27
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Date released
144
May, 2020
40
May, 2022
13
August, 2021
8
July, 2019
6
August, 2017
5
January, 2019
4
November, 2018
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
1
June, 2019
1
October, 2019
Available data
183
bigWig
169
tsv
164
bam
26
bed narrowPeak
13
fastq
5
bed bed3+
5
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
230
Homo sapiens
Biosample type
206
tissue
23
cell line
1
primary cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
230
AMP
Genome assembly (visualization)
187
hg19
164
GRCh38
Lab
177
AMP-T2D consortium
40
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
organ_slims!
epithelium
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
230 results
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total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
20
2
3
1
1
1
1
1
right lobe of liver
3
1
2
1
2
cell line
HepG2
14
1
1
2
2
2
1
primary cell
hepatic stellate cell
1
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