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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
153
ChIP-seq
62
ATAC-seq
11
snATAC-seq
8
DNase-seq
8
single cell RNA-seq
5
Hi-C
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
153
DNA binding
83
DNA accessibility
10
Transcription
6
DNA methylation
5
3D chromatin structure
Target of assay
103
histone
103
histone modification
56
broad histone mark
47
narrow histone mark
35
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
70
August, 2017
51
October, 2018
20
November, 2019
18
May, 2022
18
October, 2019
13
February, 2023
11
September, 2018
8
January, 2021
7
November, 2018
6
July, 2018
6
March, 2020
6
September, 2017
5
March, 2019
5
October, 2017
4
July, 2019
4
June, 2019
4
November, 2020
2
April, 2018
2
May, 2019
1
August, 2021
1
August, 2022
Available data
199
bam
143
bigWig
141
bed narrowPeak
140
fastq
69
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
16
tagAlign
12
tsv
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
3
bedpe bed3+
3
hic
1
bedpe
1
hdf5
Organism
255
Homo sapiens
Biosample type
216
tissue
31
primary cell
15
cell line
Organ
602
liver
543
pancreas
epithelium
294
kidney
281
heart
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
239
AMP
23
T1D
Genome assembly (visualization)
183
hg19
156
GRCh38
Lab
212
AMP-T2D consortium
39
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
33
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
organ_slims!
epithelium
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
262 results
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ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
50
58
7
1
3
4
1
1
body of pancreas
35
4
4
2
2
pancreas
16
4
2
1
2
1
1
1
endocrine pancreas
16
primary cell
pancreatic endocrine cell
23
pancreatic stellate cell
4
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
cell line
Panc1
13
1
1
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