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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
total RNA-seq
153
ChIP-seq
62
ATAC-seq
11
snATAC-seq
8
DNase-seq
5
Hi-C
4
MeRIP-seq
4
WGBS
4
single cell RNA-seq
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
295
Transcription
153
DNA binding
83
DNA accessibility
6
DNA methylation
5
3D chromatin structure
Target of assay
103
histone
103
histone modification
56
broad histone mark
47
narrow histone mark
35
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
159
August, 2017
122
July, 2018
51
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
18
October, 2019
11
September, 2018
9
March, 2020
8
April, 2018
8
January, 2021
7
November, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
470
bam
408
bigWig
279
tsv
239
fastq
141
bed narrowPeak
69
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
16
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
bedpe bed3+
3
hic
1
bedpe
1
hdf5
Organism
540
Homo sapiens
Biosample type
505
tissue
27
primary cell
15
cell line
Organ
865
pancreas
790
liver
665
connective tissue
490
adipose tissue
epithelium
347
heart
331
kidney
283
brain
235
vasculature
230
blood vessel
141
artery
121
limb
87
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
517
AMP
30
T1D
Genome assembly (visualization)
448
hg19
421
GRCh38
Lab
484
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
1
audit script error
Audit category:
33
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
organ_slims!
epithelium
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
547 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
Hi-C
MeRIP-seq
WGBS
single cell RNA-seq
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
284
50
58
7
1
3
4
1
1
body of pancreas
3
35
4
4
2
2
pancreas
2
16
4
2
1
2
1
1
1
endocrine pancreas
16
primary cell
pancreatic endocrine cell
23
pancreatic stellate cell
4
cell line
Panc1
13
1
1
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