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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
total RNA-seq
53
ChIP-seq
38
ATAC-seq
11
snATAC-seq
5
DNase-seq
5
Hi-C
4
MeRIP-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
189
Transcription
54
DNA accessibility
53
DNA binding
5
3D chromatin structure
2
DNA methylation
Target of assay
38
histone
38
histone modification
20
broad histone mark
18
narrow histone mark
17
control
2
nucleotide modification
Date released
118
July, 2018
39
November, 2019
37
May, 2021
20
August, 2017
18
February, 2023
18
October, 2019
16
October, 2018
9
March, 2020
8
January, 2021
6
July, 2019
4
June, 2019
4
March, 2019
4
November, 2020
2
August, 2021
2
May, 2019
1
April, 2018
1
August, 2022
1
February, 2020
Available data
474
bam
412
bigWig
283
tsv
fastq
141
bed narrowPeak
69
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
16
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
bedpe bed3+
3
hic
1
bedpe
1
hdf5
Organism
308
Homo sapiens
Biosample type
292
tissue
15
cell line
1
primary cell
Organ
583
connective tissue
475
pancreas
447
adipose tissue
354
kidney
353
heart
326
liver
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
278
AMP
30
T1D
Genome assembly (visualization)
236
hg19
225
GRCh38
Lab
271
AMP-T2D consortium
27
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
audit script error
Audit category:
1
inconsistent assembly
organ_slims!
epithelium
files.file_type!
fastq
BIOSAMPLE
ASSAY
308 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
Hi-C
MeRIP-seq
RRBS
small RNA-seq
pCHi-C
single cell RNA-seq
tissue
islet of Langerhans
181
22
38
7
3
4
1
endocrine pancreas
16
pancreas
2
4
2
1
1
1
body of pancreas
3
2
2
2
cell line
Panc1
13
1
1
primary cell
pancreatic stellate cell
1
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