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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
553
ChIP-seq
184
total RNA-seq
23
ATAC-seq
7
WGBS
6
DNase-seq
4
pCHi-C
3
Hi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
553
DNA binding
188
Transcription
29
DNA accessibility
8
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
342
transcription factor
114
control
94
histone modification
93
histone
82
recombinant protein
56
RNA binding protein
55
narrow histone mark
38
broad histone mark
22
chromatin remodeller
5
other context
5
other post-translational modification
Date released
315
November, 2017
194
May, 2020
62
November, 2018
54
August, 2017
48
December, 2017
40
May, 2022
31
August, 2021
12
January, 2019
8
December, 2018
8
July, 2019
6
October, 2019
4
March, 2020
3
February, 2021
1
February, 2020
1
June, 2019
1
October, 2017
Available data
679
bam
614
bigWig
474
fastq
436
bed narrowPeak
356
bigBed narrowPeak
170
tsv
82
tagAlign
63
bed broadPeak
63
bigBed broadPeak
9
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
vcf
Organism
788
Homo sapiens
Biosample type
401
cell line
386
tissue
1
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
393
heart
354
kidney
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
788
AMP
Genome assembly (visualization)
613
hg19
523
GRCh38
Lab
717
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
brain
BIOSAMPLE
ASSAY
788 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
1
2
2
2
1
tissue
liver
145
167
20
3
2
1
1
1
1
1
spleen
20
1
2
1
1
right lobe of liver
10
3
1
1
2
2
primary cell
hepatic stellate cell
1
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