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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
total RNA-seq
42
ChIP-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
103
Transcription
42
DNA binding
29
DNA accessibility
Target of assay
86
histone
86
histone modification
broad histone mark
42
narrow histone mark
Date released
108
May, 2021
45
May, 2020
23
February, 2023
16
January, 2021
4
March, 2020
Available data
138
bam
138
bigWig
96
tsv
42
bed narrowPeak
40
tagAlign
Organism
196
Homo sapiens
Biosample type
160
primary cell
31
tissue
5
cell line
Organ
34
pancreas
8
blood
8
bodily fluid
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3510
AMP
196
T1D
172
HPAP
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
138
GRCh38
138
hg19
Lab
192
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
organ_slims!
epithelium
target.investigated_as!
broad histone mark
files.file_type!
bedpe
BIOSAMPLE
ASSAY
196 results
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total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
40
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
7
2
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
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