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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
Assay category
36
DNA binding
Target of assay
26
histone
26
histone modification
25
transcription factor
broad histone mark
13
chromatin remodeller
11
narrow histone mark
6
RNA binding protein
1
recombinant protein
Date released
15
November, 2017
9
August, 2017
5
December, 2017
5
November, 2018
1
February, 2018
1
October, 2018
Available data
36
bam
36
bigWig
36
fastq
35
bed narrowPeak
23
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
5
bed bed3+
5
tagAlign
Organism
36
Homo sapiens
Biosample type
20
cell line
11
in vitro differentiated cells
3
tissue
1
primary cell
1
stem cell
Organ
21
liver
6
connective tissue
6
pancreas
epithelium
2
embryo
Project
36
AMP
Genome assembly (visualization)
36
hg19
33
GRCh38
Lab
36
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
36
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
organ_slims!
epithelium
target.investigated_as!
broad histone mark
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
cell line
HepG2
20
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
2
Posterior foregut
1
pancreatic endoderm
1
primitive gut cell
1
tissue
body of pancreas
1
liver
1
pancreas
1
primary cell
skeletal muscle myoblast
1
stem cell
hESC
1
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