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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
DNase-seq
59
ChIP-seq
Assay category
190
DNA accessibility
59
DNA binding
Target of assay
47
transcription factor
26
histone
26
histone modification
broad histone mark
12
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
173
June, 2019
52
November, 2017
9
August, 2017
9
November, 2018
5
October, 2019
1
November, 2020
Available data
2741
bam
2483
bigWig
1444
tsv
1286
bed narrowPeak
1006
fastq
738
bigBed narrowPeak
266
bed broadPeak
249
bigBed broadPeak
245
tagAlign
241
bed bed3+
161
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
18
bedpe bed3+
17
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
249
Homo sapiens
Biosample type
176
tissue
51
cell line
21
primary cell
1
in vitro differentiated cells
Organ
78
kidney
55
liver
38
brain
36
limb
33
musculature of body
30
heart
epithelium
18
ureter
15
vasculature
11
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
249
AMP
Genome assembly (visualization)
234
GRCh38
232
hg19
Lab
249
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
7
inconsistent control read length
organ_slims!
epithelium
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
249 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
50
Panc1
1
primary cell
skeletal muscle myoblast
1
7
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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