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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
427
ChIP-seq
180
total RNA-seq
21
ATAC-seq
5
DNase-seq
4
WGBS
3
Hi-C
3
pCHi-C
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
427
DNA binding
181
Transcription
26
DNA accessibility
5
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
336
transcription factor
control
88
histone modification
87
histone
82
recombinant protein
56
RNA binding protein
53
narrow histone mark
34
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
259
November, 2017
171
May, 2020
53
November, 2018
43
August, 2017
40
May, 2022
36
December, 2017
27
August, 2021
July, 2019
6
October, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
1
June, 2019
Available data
578
bigWig
549
bam
422
bed narrowPeak
374
fastq
343
bigBed narrowPeak
162
tsv
62
bed broadPeak
62
bigBed broadPeak
55
tagAlign
7
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
bed bed3
1
csv
1
vcf
Organism
648
Homo sapiens
Biosample type
340
cell line
307
tissue
1
primary cell
Organ
887
pancreas
672
liver
625
connective tissue
epithelium
455
adipose tissue
348
heart
331
kidney
239
brain
202
vasculature
198
blood vessel
155
bone element
129
artery
100
limb
80
musculature of body
63
blood
63
bodily fluid
59
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
648
AMP
Genome assembly (visualization)
577
hg19
498
GRCh38
Lab
581
AMP-T2D consortium
40
Karen Mohlke, UNC
27
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
target.investigated_as!
control
files.file_type!
bed bed3
month_released!
July, 2019
BIOSAMPLE
ASSAY
648 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
318
14
1
2
2
2
1
tissue
liver
102
165
20
2
3
1
1
1
1
right lobe of liver
7
1
1
2
primary cell
hepatic stellate cell
1
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