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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
16
ATAC-seq
4
pCHi-C
3
DNase-seq
2
ChIP-seq
Assay category
19
DNA accessibility
17
Transcription
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
21
October, 2019
17
February, 2023
3
June, 2019
1
February, 2020
Available data
18
bed narrowPeak
3
bam
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
3
bigWig
3
tsv
Organism
42
Homo sapiens
Biosample type
42
tissue
Organ
893
pancreas
682
liver
649
connective tissue
epithelium
467
adipose tissue
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
42
AMP
Genome assembly (visualization)
18
hg19
3
GRCh38
Lab
42
AMP-T2D consortium
organ_slims!
epithelium
target.investigated_as!
control
files.file_type!
vcf
BIOSAMPLE
ASSAY
42 results
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total RNA-seq
ATAC-seq
pCHi-C
DNase-seq
ChIP-seq
tissue
islet of Langerhans
14
1
4
2
retina
3
15
3
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