Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
232
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
232
DNA binding
89
Transcription
15
DNA methylation
8
DNA accessibility
Target of assay
185
histone modification
184
histone
103
broad histone mark
80
narrow histone mark
47
transcription factor
control
8
RNA binding protein
3
chromatin remodeller
Date released
680
February, 2021
365
May, 2021
344
August, 2017
331
November, 2017
318
May, 2020
302
August, 2021
243
October, 2019
192
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
93
May, 2019
92
July, 2019
82
November, 2018
66
April, 2019
58
March, 2020
57
December, 2017
47
September, 2023
45
November, 2019
45
October, 2018
40
May, 2024
40
September, 2020
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
8
January, 2018
8
November, 2020
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
254
bigWig
239
fastq
234
bam
125
bed narrowPeak
89
tsv
74
tagAlign
41
bed broadPeak
39
bigBed narrowPeak
31
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
338
Homo sapiens
Biosample type
255
tissue
60
in vitro differentiated cells
29
primary cell
Organ
167
pancreas
111
connective tissue
51
adipose tissue
43
liver
23
musculature of body
epithelium
Project
344
AMP
Genome assembly (visualization)
256
hg19
230
GRCh38
Lab
344
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
12
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
epithelium
target.investigated_as!
control
BIOSAMPLE
ASSAY
344 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
35
89
1
1
liver
37
3
1
subcutaneous abdominal adipose tissue
31
3
skeletal muscle tissue
19
4
pancreas
12
+ See 4 more…
in vitro differentiated cells
adipocyte
59
1
primary cell
skeletal muscle myoblast
14
1
2
pancreatic endocrine cell
12
See all biosamples
Download