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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
ChIP-seq
30
DNase-seq
17
total RNA-seq
10
snATAC-seq
9
single cell RNA-seq
4
ATAC-seq
4
small RNA-seq
3
pCHi-C
2
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
186
DNA binding
45
DNA accessibility
30
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
185
histone
185
histone modification
115
narrow histone mark
70
broad histone mark
control
1
RNA binding protein
1
transcription factor
Date released
79
October, 2019
72
November, 2017
28
June, 2019
25
May, 2019
19
April, 2020
13
July, 2019
13
October, 2017
12
February, 2020
3
March, 2020
2
November, 2018
1
February, 2023
Available data
209
bigWig
207
bam
197
bed narrowPeak
121
bigBed narrowPeak
99
tagAlign
41
bed broadPeak
32
bed bed3+
32
bigBed broadPeak
24
tsv
12
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
266
Homo sapiens
Biosample type
260
tissue
7
primary cell
Organ
893
pancreas
683
liver
649
connective tissue
epithelium
467
adipose tissue
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
248
AMP
19
LungMap
Genome assembly (visualization)
208
GRCh38
150
hg19
Lab
248
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
epithelium
target.investigated_as!
control
BIOSAMPLE
ASSAY
267 results
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ChIP-seq
DNase-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
Hi-C
FAIRE-seq
RRBS
tissue
brain
17
14
1
1
1
layer of hippocampus
20
lung
10
9
1
caudate nucleus
13
1
1
substantia nigra
14
1
+ See 78 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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