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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
total RNA-seq
141
single cell RNA-seq
76
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
287
Transcription
87
DNA accessibility
1
3D chromatin structure
Target of assay
86
histone
histone modification
44
broad histone mark
42
narrow histone mark
Date released
68
May, 2021
62
February, 2023
54
May, 2022
47
September, 2023
45
May, 2020
40
September, 2020
39
February, 2021
19
April, 2020
16
January, 2021
5
March, 2023
2
March, 2020
Available data
100
fastq
96
bam
96
bigWig
96
tsv
73
zippedFastqFolder
1
hic
Organism
392
Homo sapiens
Biosample type
293
primary cell
95
tissue
7
cell line
2
stem cell
Organ
182
pancreas
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
172
HPAP
154
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
97
GRCh38
96
hg19
Lab
172
Klaus Kaestner, Upenn
152
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
1
ITG
Audit category:
27
audit script error
5
inconsistent ontology term
organ_slims!
epithelium
target.investigated_as!
histone modification
assay_title!
MeRIP-seq
award.project!
AMP
BIOSAMPLE
ASSAY
397 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
monocyte
53
1
exocrine cell
39
peripheral blood mononuclear cell
8
B cell
2
1
+ See 34 more…
tissue
kidney
47
islet of Langerhans
7
6
11
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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