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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
46
ATAC-seq
25
ChIP-seq
6
DNase-seq
6
single cell RNA-seq
2
WGBS
1
pCHi-C
Assay category
66
Transcription
52
DNA accessibility
25
DNA binding
2
DNA methylation
Target of assay
54
histone
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
35
February, 2023
14
May, 2019
8
July, 2019
8
October, 2019
6
August, 2021
4
June, 2019
3
February, 2020
2
March, 2020
Available data
101
bam
74
bigWig
67
tsv
59
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
146
Homo sapiens
Biosample type
78
tissue
66
cell line
2
primary cell
Organ
788
pancreas
686
liver
605
connective tissue
458
adipose tissue
epithelium
324
kidney
293
heart
163
vasculature
159
bone element
158
blood vessel
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
61
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
6
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
146
AMP
Genome assembly (visualization)
117
GRCh38
81
hg19
Lab
146
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
target.investigated_as!
histone modification
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
146 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
WGBS
pCHi-C
tissue
coronary artery
1
36
3
2
aorta
1
2
4
2
1
tibial artery
1
1
5
2
thoracic aorta
2
1
5
ascending aorta
2
4
1
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
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