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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
ChIP-seq
192
DNase-seq
5
ATAC-seq
4
FAIRE-seq
Assay category
403
DNA binding
201
DNA accessibility
Target of assay
398
transcription factor
362
histone
histone modification
228
broad histone mark
134
narrow histone mark
86
RNA binding protein
81
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
237
November, 2017
175
June, 2019
73
November, 2018
31
December, 2017
30
December, 2018
15
October, 2018
14
January, 2019
9
August, 2017
8
October, 2019
5
April, 2019
4
May, 2019
2
July, 2019
1
November, 2020
Available data
2383
bam
2089
bigWig
1444
tsv
922
fastq
903
bed narrowPeak
604
bigBed narrowPeak
239
bed broadPeak
237
bigBed broadPeak
230
bed bed3+
161
txt
74
tagAlign
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
18
bedpe bed3+
17
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
vcf
Organism
604
Homo sapiens
Biosample type
334
cell line
249
tissue
18
primary cell
3
in vitro differentiated cells
Organ
323
liver
82
kidney
53
blood
53
bodily fluid
epithelium
42
pancreas
38
heart
36
brain
36
limb
33
musculature of body
19
connective tissue
18
ureter
17
vasculature
14
blood vessel
9
adipose tissue
7
spleen
5
artery
5
eye
3
vein
2
nerve
Project
604
AMP
Genome assembly (visualization)
583
hg19
562
GRCh38
Lab
604
AMP-T2D consortium
Audit category:
28
inconsistent control
4
inconsistent ontology term
Audit category:
11
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
604 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
cell line
HepG2
280
GM12878
53
Panc1
1
tissue
liver
33
2
heart
18
muscle of arm
17
brain
14
kidney
13
1
+ See 43 more…
primary cell
cardiac fibroblast
1
3
skeletal muscle myoblast
2
2
astrocyte of the cerebellum
1
1
cardiac muscle cell
1
1
astrocyte of the hippocampus
1
+ See 5 more…
in vitro differentiated cells
adipocyte
1
2
See all biosamples
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