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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
22
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
82
DNA accessibility
22
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
histone modification
11
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
683
February, 2021
314
May, 2020
314
November, 2017
296
August, 2021
235
May, 2021
197
August, 2017
181
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
95
July, 2019
88
November, 2018
86
October, 2019
58
December, 2017
56
March, 2020
47
September, 2023
45
November, 2019
44
October, 2018
40
September, 2020
35
December, 2018
26
May, 2019
24
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
11
October, 2017
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
5
May, 2024
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
123
tsv
87
bed narrowPeak
64
xls
57
txt
32
bam
28
bigWig
7
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
295
Homo sapiens
Biosample type
229
tissue
39
cell line
28
in vitro differentiated cells
Organ
130
kidney
92
heart
29
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
epithelium
2
artery
1
adipose tissue
Project
296
AMP
Genome assembly (visualization)
89
GRCh38
42
hg19
Lab
131
AMP-T2D consortium
128
Katalin Susztak, Upenn
33
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
organ_slims!
epithelium
nerve
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
296 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
15
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
7
adipocyte
1
1
osteoblast
1
1
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