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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
DNase-seq
61
ChIP-seq
2
ATAC-seq
Assay category
192
DNA accessibility
61
DNA binding
Target of assay
61
histone
61
histone modification
transcription factor
34
broad histone mark
27
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
173
June, 2019
39
August, 2017
21
November, 2017
9
November, 2018
5
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2599
bam
2346
bigWig
1444
tsv
1171
bed narrowPeak
651
fastq
568
bigBed narrowPeak
383
tagAlign
253
bed broadPeak
233
bed bed3+
216
bigBed broadPeak
161
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
18
bedpe bed3+
17
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
247
Homo sapiens
Biosample type
213
tissue
24
primary cell
15
cell line
1
in vitro differentiated cells
Organ
78
kidney
46
musculature of body
44
brain
36
limb
30
heart
21
pancreas
epithelium
19
liver
18
ureter
15
vasculature
12
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
253
AMP
Genome assembly (visualization)
235
hg19
228
GRCh38
Lab
251
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
organ_slims!
epithelium
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
253 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 45 more…
primary cell
skeletal muscle myoblast
1
11
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
cell line
HepG2
14
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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