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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
223
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
223
DNA binding
89
Transcription
15
DNA methylation
8
DNA accessibility
Target of assay
185
histone modification
184
histone
103
broad histone mark
80
narrow histone mark
transcription factor
38
control
8
RNA binding protein
3
chromatin remodeller
Date released
678
February, 2021
358
May, 2021
341
May, 2020
335
August, 2017
302
August, 2021
272
October, 2019
196
June, 2019
158
November, 2017
153
February, 2023
135
July, 2018
120
May, 2022
111
May, 2019
95
July, 2019
74
April, 2019
59
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
September, 2020
39
February, 2018
35
December, 2017
25
February, 2020
24
November, 2018
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2019
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
7
December, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
211
fastq
208
bigWig
206
bam
101
bed narrowPeak
89
tsv
85
tagAlign
39
bed broadPeak
37
bigBed narrowPeak
14
bed bed3+
13
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
328
Homo sapiens
Biosample type
261
tissue
46
in vitro differentiated cells
28
primary cell
Organ
181
pancreas
91
connective tissue
50
liver
45
adipose tissue
epithelium
26
musculature of body
Project
335
AMP
Genome assembly (visualization)
212
hg19
186
GRCh38
Lab
335
AMP-T2D consortium
Audit category:
16
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
epithelium
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
335 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
35
89
1
1
liver
44
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 3 more…
in vitro differentiated cells
adipocyte
45
1
primary cell
skeletal muscle myoblast
13
1
2
pancreatic endocrine cell
12
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