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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
Assay category
25
DNA binding
Target of assay
888
histone modification
887
histone
449
narrow histone mark
449
transcription factor
437
broad histone mark
307
control
91
RNA binding protein
89
recombinant protein
25
chromatin remodeller
5
other context
5
other post-translational modification
2
nucleotide modification
Date released
15
November, 2017
5
November, 2018
3
August, 2017
2
December, 2017
Available data
25
bam
25
bed narrowPeak
25
bigWig
25
fastq
23
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
25
Homo sapiens
Biosample type
20
cell line
2
in vitro differentiated cells
2
tissue
1
primary cell
Organ
23
liver
blood
10
bodily fluid
2
connective tissue
epithelium
Project
25
AMP
Genome assembly (visualization)
25
hg19
23
GRCh38
Lab
25
AMP-T2D consortium
Audit category:
2
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
blood
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
cell line
HepG2
20
in vitro differentiated cells
adipocyte
2
tissue
liver
2
primary cell
skeletal muscle myoblast
1
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