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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
10
MeRIP-seq
1
ATAC-seq
1
DNase-seq
1
Hi-C
Assay category
34
DNA binding
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
28
transcription factor
9
control
5
nucleotide modification
2
RNA binding protein
2
chromatin remodeller
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
48
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
36
bam
35
fastq
32
bed narrowPeak
31
bigBed narrowPeak
31
bigWig
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
47
Homo sapiens
Biosample type
34
cell line
11
tissue
2
primary cell
Organ
27
blood
27
bodily fluid
10
pancreas
7
spleen
6
epithelium
2
connective tissue
1
liver
Project
47
AMP
Genome assembly (visualization)
32
GRCh38
32
hg19
Lab
37
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
1
inconsistent control
organ_slims!
esophagus
assay_slims!
Transcription
BIOSAMPLE
ASSAY
47 results
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Clear Filters
ChIP-seq
MeRIP-seq
ATAC-seq
DNase-seq
Hi-C
cell line
GM12878
27
EndoC_BH1
6
HepG2
1
tissue
spleen
7
islet of Langerhans
4
primary cell
osteoblast
1
1
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