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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
267
ChIP-seq
35
total RNA-seq
22
ATAC-seq
10
DNase-seq
5
Hi-C
4
pCHi-C
1
FAIRE-seq
Assay category
267
DNA binding
Target of assay
203
histone
203
histone modification
144
narrow histone mark
59
broad histone mark
43
control
21
transcription factor
7
recombinant protein
6
RNA binding protein
6
chromatin remodeller
Date released
406
November, 2017
296
August, 2017
242
October, 2019
165
May, 2021
120
May, 2019
94
December, 2017
80
April, 2019
74
October, 2018
70
November, 2018
50
May, 2020
43
August, 2021
34
December, 2018
32
September, 2018
31
June, 2019
25
January, 2019
24
February, 2018
15
October, 2017
13
November, 2019
8
February, 2021
6
September, 2017
3
March, 2020
Available data
244
bam
197
bigWig
195
bed narrowPeak
79
bigBed narrowPeak
49
tagAlign
25
fastq
2
bed broadPeak
2
bigBed broadPeak
1
tagAlign bed3+
Organism
267
Homo sapiens
Biosample type
202
tissue
41
cell line
24
primary cell
Organ
84
brain
59
limb
40
blood vessel
40
vasculature
35
nerve
24
epithelium
23
artery
21
kidney
18
blood
18
bodily fluid
17
vein
13
pancreas
7
spleen
5
heart
5
liver
4
gonad
4
ovary
2
eye
1
connective tissue
1
lymph node
1
pituitary gland
Project
267
AMP
Genome assembly (visualization)
199
hg19
197
GRCh38
Lab
267
AMP-T2D consortium
Audit category:
12
inconsistent ontology term
organ_slims!
esophagus
BIOSAMPLE
ASSAY
267 results
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Clear Filters
ChIP-seq
tissue
tibial nerve
35
tibial artery
23
islet of Langerhans
21
spleen
7
brain
5
+ See 78 more…
cell line
GM12878
18
Panc1
13
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
primary cell
endothelial cell of umbilical vein
17
epithelial cell of proximal tubule
7
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