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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
356
single cell RNA-seq
212
DNase-seq
85
RNA microarray
75
WGBS
56
pCHi-C
55
snATAC-seq
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
60
DNA accessibility
Date released
21
May, 2022
16
January, 2021
10
April, 2020
6
August, 2021
2
February, 2023
2
July, 2019
1
August, 2017
1
November, 2018
1
October, 2019
Available data
21
zippedFastqFolder
5
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
2
fastq
1
tar
Organism
59
Homo sapiens
Biosample type
30
primary cell
30
tissue
Organ
12
pancreas
10
lung
8
blood
8
bodily fluid
7
kidney
1
blood vessel
1
brain
1
epithelium
1
vasculature
1
vein
Project
21
HPAP
18
T1D
11
AMP
10
LungMap
Genome assembly (visualization)
5
hg19
Lab
21
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
5
AMP-T2D consortium
Audit category:
audit script error
organ_slims!
esophagus
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
60 results
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snATAC-seq
FAIRE-seq
primary cell
Langerhans cell
21
peripheral blood mononuclear cell
8
endothelial cell of umbilical vein
1
tissue
lung
10
islet of Langerhans
6
1
kidney
6
1
pancreas
4
1
frontal cortex
1
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