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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
42
ATAC-seq
9
total RNA-seq
4
GRO-seq
4
Hi-C
3
pCHi-C
2
Capture-C
1
DNase-seq
Assay category
198
DNA binding
43
DNA accessibility
9
Transcription
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
68
August, 2017
53
May, 2021
43
December, 2017
35
August, 2021
24
February, 2018
16
February, 2023
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
4
March, 2020
1
August, 2018
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
263
Homo sapiens
Biosample type
1701
tissue
818
primary cell
543
cell line
263
in vitro differentiated cells
6
stem cell
Organ
92
connective tissue
23
embryo
22
epithelium
15
liver
3
pancreas
1
adipose tissue
Project
263
AMP
Genome assembly (visualization)
170
hg19
138
GRCh38
4
hg18
Lab
209
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
25
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
organ_slims!
esophagus
files.file_type!
tsv
BIOSAMPLE
ASSAY
263 results
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ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
Hi-C
pCHi-C
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
67
8
1
1
1
embryonic stem cell
40
6
5
neural progenitor cell
21
10
pancreatic endoderm
18
1
hepatocyte
15
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