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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
WGBS
39
ATAC-seq
16
DNase-seq
3
ChIP-seq
2
Hi-C
Assay category
55
DNA accessibility
41
DNA methylation
3
DNA binding
2
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
80
May, 2022
14
June, 2019
3
August, 2021
2
July, 2019
2
October, 2019
Available data
317
bam
301
bigWig
257
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
101
Homo sapiens
Biosample type
101
primary cell
Organ
109
pancreas
101
epithelium
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
27
connective tissue
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
80
HPAP
21
AMP
Genome assembly (visualization)
19
GRCh38
15
hg19
Lab
80
Klaus Kaestner, Upenn
21
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
esophagus
BIOSAMPLE
ASSAY
101 results
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WGBS
ATAC-seq
DNase-seq
ChIP-seq
Hi-C
primary cell
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
hepatocyte
1
3
pancreatic acinar cell
4
brain microvascular endothelial cell
1
1
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