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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
226
ChIP-seq
78
ATAC-seq
52
single cell RNA-seq
41
WGBS
29
DNase-seq
21
snATAC-seq
1
FAIRE-seq
Assay category
226
DNA binding
129
DNA accessibility
52
Transcription
41
DNA methylation
Target of assay
216
histone
216
histone modification
112
broad histone mark
104
narrow histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
127
May, 2021
47
June, 2019
46
September, 2018
33
August, 2017
21
October, 2019
19
September, 2020
6
November, 2017
5
September, 2017
4
May, 2019
3
August, 2021
2
November, 2020
1
February, 2021
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
448
Homo sapiens
Biosample type
984
tissue
448
primary cell
404
cell line
132
in vitro differentiated cells
2
stem cell
Organ
186
epithelium
148
pancreas
22
kidney
21
vasculature
17
blood vessel
17
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
6
liver
3
eye
Project
211
AMP
153
HPAP
84
T1D
Genome assembly (visualization)
288
hg19
261
GRCh38
Lab
181
AMP-T2D consortium
153
Klaus Kaestner, Upenn
114
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
esophagus
BIOSAMPLE
ASSAY
448 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
FAIRE-seq
primary cell
monocyte
84
13
Langerhans cell
52
21
pancreatic alpha cell
7
28
25
pancreatic beta cell
7
20
16
CD8-positive, alpha-beta T cell
30
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