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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
53
total RNA-seq
13
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
66
Transcription
1
DNA accessibility
Date released
89
February, 2021
57
August, 2021
4
February, 2023
1
May, 2022
1
October, 2022
Available data
3187
bam
2859
bigWig
1607
bed narrowPeak
1487
tsv
1163
fastq
1042
bigBed narrowPeak
320
bed broadPeak
314
tagAlign
285
bigBed broadPeak
269
bed bed3+
152
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
18
bedpe bed3+
17
hic
12
bed bed3
8
csv
5
hdf5
4
bed bedgraph
4
tar
2
ibed
1
tagAlign bed3+
Organism
151
Homo sapiens
Biosample type
151
tissue
1
cell line
Organ
88
bone element
62
kidney
4
skeleton
1
musculature of body
Project
152
AMP
Genome assembly (visualization)
1
hg19
Lab
95
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
84
inconsistent ontology term
6
audit script error
organ_slims!
esophagus
BIOSAMPLE
ASSAY
152 results
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RNA microarray
total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
acetabular part of hip bone
1
ilium
1
ischium
1
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cell line
MIN6
1
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