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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
3
DNase-seq
2
ATAC-seq
Assay category
88
DNA binding
5
DNA accessibility
Target of assay
65
histone modification
64
histone
33
broad histone mark
30
narrow histone mark
23
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
313
November, 2017
206
June, 2019
182
October, 2019
130
May, 2021
106
August, 2021
96
May, 2019
93
August, 2017
72
December, 2017
70
November, 2018
65
April, 2019
65
February, 2023
40
May, 2024
30
December, 2018
27
May, 2020
23
February, 2021
21
January, 2019
20
May, 2022
16
February, 2018
8
October, 2017
7
July, 2019
6
November, 2019
5
October, 2018
2
November, 2020
Available data
119
fastq
114
bam
113
bigWig
93
bed narrowPeak
69
tagAlign
29
bed broadPeak
25
bigBed narrowPeak
15
bigBed broadPeak
14
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
Organism
93
Homo sapiens
Biosample type
43
in vitro differentiated cells
34
tissue
16
primary cell
Organ
pancreas
46
connective tissue
18
liver
17
epithelium
13
musculature of body
3
adipose tissue
Project
93
AMP
Genome assembly (visualization)
93
hg19
76
GRCh38
Lab
93
AMP-T2D consortium
Audit category:
8
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
esophagus
pancreas
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
DNase-seq
ATAC-seq
in vitro differentiated cells
adipocyte
42
1
tissue
liver
17
skeletal muscle tissue
13
adipose tissue
1
right lobe of liver
1
subcutaneous abdominal adipose tissue
1
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primary cell
skeletal muscle myoblast
14
2
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