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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
ATAC-seq
14
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
58
Transcription
14
DNA binding
4
DNA accessibility
Target of assay
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
58
February, 2021
7
October, 2019
3
May, 2019
2
August, 2021
2
February, 2020
2
July, 2019
2
June, 2019
1
March, 2020
Available data
72
bam
63
bigWig
59
tsv
9
bed narrowPeak
6
tagAlign
5
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
77
Homo sapiens
Biosample type
58
cell line
17
tissue
2
primary cell
Organ
666
liver
643
pancreas
581
connective tissue
453
adipose tissue
328
epithelium
249
heart
249
kidney
147
bone element
119
vasculature
114
blood vessel
95
brain
76
artery
67
blood
67
bodily fluid
65
limb
62
musculature of body
30
eye
25
embryo
20
lung
18
nerve
18
spleen
18
ureter
7
vein
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
77
AMP
Genome assembly (visualization)
63
GRCh38
63
hg19
Lab
77
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
esophagus
assay_title!
ATAC-seq
target.investigated_as!
histone
BIOSAMPLE
ASSAY
77 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
6
tissue
tibial artery
1
5
2
coronary artery
1
3
2
pulmonary artery
2
gastric (mucosa of stomach)
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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