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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ATAC-seq
21
total RNA-seq
12
ChIP-seq
4
pCHi-C
2
single cell RNA-seq
1
RRBS
Assay category
71
DNA accessibility
23
Transcription
12
DNA binding
1
DNA methylation
Target of assay
10
control
2
histone
2
histone modification
2
narrow histone mark
Date released
66
February, 2023
26
October, 2019
10
February, 2021
3
February, 2020
2
August, 2021
2
May, 2019
1
July, 2019
1
June, 2019
Available data
109
bam
107
bed narrowPeak
bigWig
63
tsv
31
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
111
Homo sapiens
Biosample type
99
tissue
10
cell line
2
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
111
AMP
Genome assembly (visualization)
43
GRCh38
36
hg19
Lab
111
AMP-T2D consortium
organ_slims!
esophagus
files.file_type!
bigWig
BIOSAMPLE
ASSAY
111 results
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ATAC-seq
total RNA-seq
ChIP-seq
pCHi-C
single cell RNA-seq
RRBS
tissue
coronary artery
35
1
2
islet of Langerhans
1
14
2
4
retina
15
3
pigmented layer of retina
12
2
tibial artery
1
5
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cell line
smooth muscle cell of the coronary artery
8
2
primary cell
retinal pigment epithelial cell
1
1
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