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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ATAC-seq
28
ChIP-seq
4
DNase-seq
4
total RNA-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
41
DNA accessibility
28
DNA binding
6
Transcription
Target of assay
20
histone
20
histone modification
14
broad histone mark
7
control
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
35
February, 2023
26
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
Available data
62
bed narrowPeak
36
bam
29
bigWig
25
bigBed narrowPeak
7
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
76
Homo sapiens
Biosample type
74
tissue
cell line
2
primary cell
Organ
854
pancreas
684
connective tissue
491
adipose tissue
445
epithelium
390
liver
335
kidney
327
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
76
AMP
Genome assembly (visualization)
64
GRCh38
29
hg19
Lab
76
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
esophagus
biosample_type!
cell line
BIOSAMPLE
ASSAY
76 results
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ATAC-seq
ChIP-seq
DNase-seq
total RNA-seq
single cell RNA-seq
pCHi-C
tissue
coronary artery
36
5
2
1
tibial artery
1
23
2
1
pulmonary artery
2
gastric (mucosa of stomach)
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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